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Home directory missing?
I started a default instance of bamboo 3.0.4-studio-4-1308709939816 ami-0671896f and upgraded php and phpunit
Then followed the instructions http://confluence.atlassian.com/display/BAMBOO/Creating+a+Custom+Elastic+Image with some differences.
I skipped to step 4 by accessing the instance bamboo started as when I created an instance with the steps in Step 3 with the ami-0671896f, it never started because of missing keys/folders
Since bamboo binaries and user were already there I next skipped to step 5.4 and adjusted the keys to be my own then finally packaged the bundle
When starting the instance it starts to fail when it cant find /home/
Any idea why the new image wouldnt contain the /home/ directory when I created it from an image that had it?
Log dump: http://pastebin.com/QHux7ZzR
Starting ConsoleKit: [ OK ] Starting crond: [ OK ] [ OK ] Starting anacron: Could not initialise connection to hald. Normally this means the HAL daemon (hald) is not running or not ready. [ OK ] grep: /root/.ssh/authorized_keys: No such file or directory Attempting ami-utils update from S3 --2011-12-06 11:30:17-- http://s3.amazonaws.com/ec2-downloads/ec2-ami-tools.noarch.rpm Resolving s3.amazonaws.com... 72.21.211.170 Connecting to s3.amazonaws.com|72.21.211.170|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 172568 (169K) [application/x-unknown-content-type] Saving to: `ec2-ami-tools.noarch.rpm' 0% [ ] 0 --.-K/s 82% [===============================> ] 141,907 683K/s 100%[======================================>] 172,568 824K/s in 0.2s 2011-12-06 11:30:18 (824 KB/s) - `ec2-ami-tools.noarch.rpm' saved [172568/172568] ec2: Retreived ec2-ami-tools from S3 package ec2-ami-tools-1.4-0.2.noarch is already installed ec2: Preparing... ################################################## ec2: ec2-ami-tools already up to date ec2: -----BEGIN SSH HOST KEY FINGERPRINTS----- ec2: 2048 b5:key_remove_by_me:01 /etc/ssh/ssh_host_key.pub ec2: 2048 b4:key_remove_by_me:fd /etc/ssh/ssh_host_rsa_key.pub /etc/ssh/ssh_host_dsa_key.pub: No such file or directory ec2: -----END SSH HOST KEY FINGERPRINTS----- mv: cannot stat `/home/*': No such file or directory mv: cannot stat `/home/.*': No such file or directory mount: mount point /home does not exist Stopping crond: su: warning: cannot change directory to /home/bamboo: No such file or directory [ OK ] Starting crond: [ OK ] [ OK ] tee: /home/bamboo/bamboo-elastic-agent.out: No such file or directory 0 [main] INFO com.atlassian.bamboo.agent.elastic.client.ElasticAgentBootstrap - Using tunnnelling. Registering 'httpt' and 'httpst' protocols. Fedora release 8 (Werewolf) Kernel 2.6.21.7-2.fc8xen on an i686 ip-10-66-93-95 login: 1411 [com.sun.sungrid.service.tunnel.server.TunnelServer] INFO com.sun.sungrid.service.tunnel.server.TunnelServer - Waiting for tunnel connection. 3308 [com.sun.sungrid.service.tunnel.server.TunnelServer] INFO com.sun.sungrid.service.tunnel.server.TunnelServer - Accepted tunnel connection. 3310 [com.sun.sungrid.service.tunnel.server.TunnelServer] INFO com.sun.sungrid.service.tunnel.server.TunnelServer - Waiting for tunnel connection. 3310 [com.sun.sungrid.service.tunnel.server.TunnelServer] INFO com.sun.sungrid.service.tunnel.server.TunnelServer - Accepted tunnel connection. 3311 [com.sun.sungrid.service.tunnel.server.TunnelServer] INFO com.sun.sungrid.service.tunnel.server.TunnelServer - Waiting for tunnel connection. 3503 [tunnelserver-26224-1-thread-3] INFO com.sun.sungrid.service.tunnel.server.LocalAcceptor - Waiting for local connection on port 46593. 3514 [tunnelserver-26224-1-thread-1] INFO com.sun.sungrid.service.tunnel.server.LocalAcceptor - Waiting for local connection on port 4527. Agent bootstrap using baseUrl: httpt://127.0.0.1:46593/builds/agentServer/ 3580 [main] INFO com.atlassian.bamboo.agent.elastic.client.ElasticAgentBootstrap - Using tunnelling. Setting virtual host name to ourcompany.jira.com Requesting fingerprintRequestUrl: httpt://127.0.0.1:46593/builds/agentServer/GetFingerprint.action?hostName=ip-10-66-93-95.ec2.internal&agentType=elastic&instanceId=i-1fdfd27c 5619 [tunnelserver-26224-1-thread-3] INFO com.sun.sungrid.service.tunnel.server.LocalAcceptor - Accepted local connection on port 46593. 5667 [com.sun.sungrid.service.tunnel.server.TunnelServer] INFO com.sun.sungrid.service.tunnel.server.TunnelServer - Accepted tunnel connection. 5667 [com.sun.sungrid.service.tunnel.server.TunnelServer] INFO com.sun.sungrid.service.tunnel.server.TunnelServer - Waiting for tunnel connection. 5745 [tunnelserver-26224-1-thread-5] INFO com.sun.sungrid.service.tunnel.server.LocalAcceptor - Waiting for local connection on port 46593. 5811 [Thread-2] INFO com.atlassian.bamboo.v2.build.agent.remote.RemoteAgent - com.atlassian.bamboo.agent.elastic.client.ElasticAgent starting. 5841 [tunnelserver-26224-1-thread-5] INFO com.sun.sungrid.service.tunnel.server.LocalAcceptor - Accepted local connection on port 46593. 5887 [com.sun.sungrid.service.tunnel.server.TunnelServer] INFO com.sun.sungrid.service.tunnel.server.TunnelServer - Accepted tunnel connection. 5887 [com.sun.sungrid.service.tunnel.server.TunnelServer] INFO com.sun.sungrid.service.tunnel.server.TunnelServer - Waiting for tunnel connection. 5958 [tunnelserver-26224-1-thread-7] INFO com.sun.sungrid.service.tunnel.server.LocalAcceptor - Waiting for local connection on port 46593. 6502 [tunnelserver-26224-1-thread-7] INFO com.sun.sungrid.service.tunnel.server.LocalAcceptor - Accepted local connection on port 46593. 6552 [com.sun.sungrid.service.tunnel.server.TunnelServer] INFO com.sun.sungrid.service.tunnel.server.TunnelServer - Accepted tunnel connection. 6552 [com.sun.sungrid.service.tunnel.server.TunnelServer] INFO com.sun.sungrid.service.tunnel.server.TunnelServer - Waiting for tunnel connection. log4j:ERROR setFile(null,true) call failed. java.io.FileNotFoundException: atlassian-bamboo.log (Permission denied) at java.io.FileOutputStream.openAppend(Native Method) at java.io.FileOutputStream.<init>(FileOutputStream.java:177) at java.io.FileOutputStream.<init>(FileOutputStream.java:102) at org.apache.log4j.FileAppender.setFile(FileAppender.java:290) at org.apache.log4j.RollingFileAppender.setFile(RollingFileAppender.java:194) at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:164) at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:257) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:133) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:97) at org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:689) at org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:647) at org.apache.log4j.PropertyConfigurator.configureRootCategory(PropertyConfigurator.java:544) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:440) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:476) at org.apache.log4j.PropertyConfigurator.configure(PropertyConfigurator.java:354) at com.atlassian.bamboo.v2.build.agent.remote.RemoteAgent.configureLog4j(RemoteAgent.java:103) at com.atlassian.bamboo.v2.build.agent.remote.RemoteAgent.start(RemoteAgent.java:49) at com.atlassian.bamboo.agent.bootstrap.AgentRunner.run(AgentRunner.java:20) at java.lang.Thread.run(Thread.java:619) 2011-12-06 11:30:30,358 INFO [tunnelserver-26224-1-thread-9] [LocalAcceptor] Waiting for local connection on port 46593. 2011-12-06 11:30:30,609 INFO [Thread-2] [RemoteAgent] Starting Bamboo Remote Agent... 2011-12-06 11:30:30,610 INFO [Thread-2] [RemoteAgent] Starting application context... 2011-12-06 11:30:35,324 INFO [Thread-2] [RemoteAgentHomeLocator] bamboo.home set to default location: "/home/bamboo/bamboo-agent-home" (Customise by specifying -Dbamboo.home=<directory> on the command line.) 2011-12-06 11:30:35,324 WARN [Thread-2] [AgentConfiguration] Application home does not exist. Creating directory: /home/bamboo/bamboo-agent-home Exiting due to fatal exception. org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'agentConfiguration' defined in class path resource [applicationContextRemoteAgent.xml]: Invocation of init method failed; nested exception is com.atlassian.bamboo.configuration.ConfigurationException: Could not make directory/ies: /home/bamboo/bamboo-agent-home Caused by: com.atlassian.bamboo.configuration.ConfigurationException: Could not make directory/ies: /home/bamboo/bamboo-agent-home at com.atlassian.bamboo.v2.build.agent.remote.AgentConfiguration.createAppHomeIfNotExists(AgentConfiguration.java:212) at com.atlassian.bamboo.v2.build.agent.remote.AgentConfiguration.init(AgentConfiguration.java:53) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1237) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1203) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1167) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:427) at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:249) at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:155) at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:246) at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160) at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:291) at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:352) at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:122) at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:88) at com.atlassian.bamboo.v2.build.agent.remote.RemoteAgent.initApplicationContext(RemoteAgent.java:190) at com.atlassian.bamboo.v2.build.agent.remote.RemoteAgent.start(RemoteAgent.java:53) at com.atlassian.bamboo.agent.bootstrap.AgentRunner.run(AgentRunner.java:20) at java.lang.Thread.run(Thread.java:619) 2011-12-06 11:30:35,338 FATAL [Thread-2] [AgentBootstrap] Exiting due to fatal exception. org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'agentConfiguration' defined in class path resource [applicationContextRemoteAgent.xml]: Invocation of init method failed; nested exception is com.atlassian.bamboo.configuration.ConfigurationException: Could not make directory/ies: /home/bamboo/bamboo-agent-home Caused by: com.atlassian.bamboo.configuration.ConfigurationException: Could not make directory/ies: /home/bamboo/bamboo-agent-home at com.atlassian.bamboo.v2.build.agent.remote.AgentConfiguration.createAppHomeIfNotExists(AgentConfiguration.java:212) at com.atlassian.bamboo.v2.build.agent.remote.AgentConfiguration.init(AgentConfiguration.java:53) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1237) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1203) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1167) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:427) at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:249) at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:155) at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:246) at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160) at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:291) at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:352) at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:122) at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:88) at com.atlassian.bamboo.v2.build.agent.remote.RemoteAgent.initApplicationContext(RemoteAgent.java:190) at com.atlassian.bamboo.v2.build.agent.remote.RemoteAgent.start(RemoteAgent.java:53) at com.atlassian.bamboo.agent.bootstrap.AgentRunner.run(AgentRunner.java:20) at java.lang.Thread.run(Thread.java:619) INIT: Switching to runlevel: 0 INIT: Sending processes the TERM signal INIT: Sending processes the KILL signal Stopping ConsoleKit: [ OK ] Stopping sshd: [ OK ] Stopping crond: [ OK ] Stopping system message bus: [ OK ] Shutting down kernel logger: [ OK ] Shutting down system logger: [ OK ] Shutting down interface eth0: [ OK ] Shutting down loopback interface: [ OK ] Starting killall: [ OK ] Sending all processes the TERM signal... Sending all processes the KILL signal... Saving random seed: Syncing hardware clock to system time Turning off swap: Turning off quotas: Unmounting file systems: mount: /proc is busy Halting system... System halted.
3 answers
1 accepted
Przemek Bruski
Atlassian Team
March 26, 2012 edited Atlassian Team members are employees working across the company in a wide variety of roles.
Normally, /home is mounted on ephemeral storage. If you want to customise your image, you need to copy the /home to root partition before saving the image so that it's a part of your final image. Something like this should do the trick:
/etc/init.d/crond stop
agentCfgName=bamboo-agent.cfg.xml
agentCfgFile=/home/bamboo/bamboo-agent-home/${agentCfgName}
sed -n -e '/<agentDefinition/,/<.agentDefinition/!p' ${agentCfgFile} | grep -v '<agentUuid>' >/tmp/${agentCfgName}
echo Killing all Java processes...
killall java 2>/dev/null
sleep 2
killall -9 java 2>/dev/null
rootDevice=$(mount |grep " / " | sed "s/ .*//")
tempRootMountPoint=/tmp/rootDevice${RANDOM}
echo Mounting root device $rootDevice in ${tempRootMountPoint} to copy data from ephemeral storage...
mkdir ${tempRootMountPoint}
mount ${rootDevice} ${tempRootMountPoint}
echo Copying back /home from ephemeral storage to the root device...
cp -ax /home/ ${tempRootMountPoint}
mv /tmp/${agentCfgName} ${tempRootMountPoint}/${agentCfgFile}
chown -R bamboo:bamboo ${tempRootMountPoint}/home/bamboo/
This script will be disctributed with Bamboo at some point.
Before Przemek responded, running the ec2-bundle-vol cmd with --all included everything. I have not tried his solution as we got it running with that.
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fshehzad
I'm New Here 
June 18, 2012 edited I'm New Here
Those new to the Atlassian Community have posted less than three times. Give them a warm welcome!
Hi Chris,
Are you able to solve this issue ? Below suggestion didnot work for me. it fails to create volume after i execute it.
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