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- Upgrading 7.13 to 7.14 or 7.19 fails
Upgrading 7.13 to 7.14 or 7.19 fails
I tried to upgrade Confluence server from 7.13.4 to 7.19.1. The upgrade installer runs without errors, but I cannot connect to the application from my computer. Also tried upgrading to 7.19.0 and 7.14.4, but renders the same result.
Upgrading from 7.13.4 to 7.13.9 works just fine.
I tried looking up error in log files, but could not really find anything that I could make sense of. Also looked for infrastructural changes for 7.14, but aside from an unsupported postgreSQL version that we do not use, there was nothing worth noting.
Can someone point me in the direction of logs that I should check? Or post upgrade commands that I must use. I followed the official documentation, but I'm not really getting anywhere.
Here's the atlassian-confluence.log:
2022-09-27 14:52:02,266 INFO [Catalina-utility-3] [com.atlassian.confluence.lifecycle] destroy Shutting down long running task service
2022-09-27 14:52:02,268 INFO [Catalina-utility-3] [atlassian.plugin.manager.DefaultPluginManager] lambda$shutdown$5 Preparing to shut down the plugin system
2022-09-27 14:52:02,291 INFO [Catalina-utility-3] [atlassian.plugin.manager.DefaultPluginManager] lambda$shutdown$5 Shutting down the plugin system
2022-09-27 14:52:02,885 WARN [FelixShutdown] [insights.core.service.DefaultDataExportOrchestrator] destroy DefaultDataExportOrchestrator is about to be destroyed. Cancelling possible in flight export.
2022-09-27 14:52:03,662 WARN [FelixShutdown] [addons.analytics.scheduler.EventLimiterScheduleManagerImpl] destroy Destroying Event Limiter Schedule
2022-09-27 14:52:03,663 WARN [FelixShutdown] [addons.analytics.scheduler.DataRetentionScheduleManagerImpl] destroy Destroying Data Retention Schedule
2022-09-27 14:52:08,209 WARN [FelixStartLevel] [plugin.osgi.factory.OsgiBundlePlugin] disableInternal Cannot disable Bundle 'com.atlassian.plugin.jslibs', not ACTIVE
2022-09-27 14:52:08,630 WARN [FelixStartLevel] [plugin.osgi.factory.OsgiBundlePlugin] disableInternal Cannot disable Bundle 'com.atlassian.confluence.plugins.confluence-icons', not ACTIVE
2022-09-27 14:52:08,671 WARN [FelixStartLevel] [plugin.osgi.factory.OsgiBundlePlugin] disableInternal Cannot disable Bundle 'com.atlassian.confluence.plugins.confluence-editor-v4', not ACTIVE
2022-09-27 14:52:08,881 WARN [FelixStartLevel] [plugin.osgi.factory.OsgiBundlePlugin] disableInternal Cannot disable Bundle 'org.apache.servicemix.bundles.spring-tx-5.3.21.1', not ACTIVE
2022-09-27 14:52:08,881 WARN [FelixStartLevel] [plugin.osgi.factory.OsgiBundlePlugin] disableInternal Cannot disable Bundle 'org.apache.servicemix.bundles.spring-jdbc-5.3.21.1', not ACTIVE
2022-09-27 14:52:09,396 WARN [FelixStartLevel] [plugin.osgi.factory.OsgiBundlePlugin] disableInternal Cannot disable Bundle 'com.atlassian.plugins.atlassian-spring-interceptor-adapter-plugin-1.1', not ACTIVE
2022-09-27 14:52:09,404 WARN [FelixStartLevel] [plugin.osgi.factory.OsgiBundlePlugin] disableInternal Cannot disable Bundle 'com.atlassian.plugin.atlassian-spring-scanner-runtime', not ACTIVE
2022-09-27 14:52:09,404 WARN [FelixStartLevel] [plugin.osgi.factory.OsgiBundlePlugin] disableInternal Cannot disable Bundle 'com.atlassian.plugin.atlassian-spring-scanner-annotation', not ACTIVE
2022-09-27 14:52:09,405 WARN [FelixStartLevel] [plugin.osgi.factory.OsgiBundlePlugin] disableInternal Cannot disable Bundle 'com.atlassian.platform.spring-velocity-support-0.0.7', not ACTIVE
2022-09-27 14:52:09,406 WARN [FelixStartLevel] [plugin.osgi.factory.OsgiBundlePlugin] disableInternal Cannot disable Bundle 'com.atlassian.oauth.atlassian-oauth-api-4.1.0', not ACTIVE
2022-09-27 14:52:09,417 WARN [FelixStartLevel] [plugin.osgi.factory.OsgiBundlePlugin] disableInternal Cannot disable Bundle 'com.atlassian.gadgets.atlassian-gadgets-spi-6.0.6', not ACTIVE
2022-09-27 14:52:09,417 WARN [FelixStartLevel] [plugin.osgi.factory.OsgiBundlePlugin] disableInternal Cannot disable Bundle 'com.atlassian.gadgets.atlassian-gadgets-api-6.0.6', not ACTIVE
2022-09-27 14:52:09,491 WARN [FelixStartLevel] [plugin.osgi.factory.OsgiBundlePlugin] disableInternal Cannot disable Bundle 'com.atlassian.confluence.plugins.quickedit', not ACTIVE
2022-09-27 14:52:10,007 WARN [FelixStartLevel] [plugin.osgi.factory.OsgiBundlePlugin] disableInternal Cannot disable Bundle 'com.atlassian.bundles.json-20070829.0.0.1', not ACTIVE
2022-09-27 14:52:10,775 WARN [Catalina-utility-3] [plugin.osgi.factory.OsgiBundlePlugin] uninstallInternal OSGi container not running or undefined: Will not remove bundle listener and will not close package admin service
2022-09-27 14:52:10,787 WARN [Catalina-utility-3] [plugin.osgi.factory.OsgiBundlePlugin] uninstallInternal OSGi container not running or undefined: Will not remove bundle listener and will not close package admin service
2022-09-27 14:52:10,844 WARN [Catalina-utility-3] [plugin.osgi.factory.OsgiBundlePlugin] uninstallInternal OSGi container not running or undefined: Will not remove bundle listener and will not close package admin service
2022-09-27 14:52:10,876 WARN [Catalina-utility-3] [plugin.osgi.factory.OsgiBundlePlugin] uninstallInternal OSGi container not running or undefined: Will not remove bundle listener and will not close package admin service
2022-09-27 14:52:10,877 WARN [Catalina-utility-3] [plugin.osgi.factory.OsgiBundlePlugin] uninstallInternal OSGi container not running or undefined: Will not remove bundle listener and will not close package admin service
2022-09-27 14:52:10,878 WARN [Catalina-utility-3] [plugin.osgi.factory.OsgiBundlePlugin] uninstallInternal OSGi container not running or undefined: Will not remove bundle listener and will not close package admin service
2022-09-27 14:52:10,944 WARN [Catalina-utility-3] [plugin.osgi.factory.OsgiBundlePlugin] uninstallInternal OSGi container not running or undefined: Will not remove bundle listener and will not close package admin service
2022-09-27 14:52:10,959 WARN [Catalina-utility-3] [plugin.osgi.factory.OsgiBundlePlugin] uninstallInternal OSGi container not running or undefined: Will not remove bundle listener and will not close package admin service
2022-09-27 14:52:11,027 WARN [Catalina-utility-3] [plugin.osgi.factory.OsgiBundlePlugin] uninstallInternal OSGi container not running or undefined: Will not remove bundle listener and will not close package admin service
2022-09-27 14:52:11,068 WARN [Catalina-utility-3] [plugin.osgi.factory.OsgiBundlePlugin] uninstallInternal OSGi container not running or undefined: Will not remove bundle listener and will not close package admin service
2022-09-27 14:52:11,073 WARN [Catalina-utility-3] [plugin.osgi.factory.OsgiBundlePlugin] uninstallInternal OSGi container not running or undefined: Will not remove bundle listener and will not close package admin service
2022-09-27 14:52:11,074 WARN [Catalina-utility-3] [plugin.osgi.factory.OsgiBundlePlugin] uninstallInternal OSGi container not running or undefined: Will not remove bundle listener and will not close package admin service
2022-09-27 14:52:11,080 WARN [Catalina-utility-3] [plugin.osgi.factory.OsgiBundlePlugin] uninstallInternal OSGi container not running or undefined: Will not remove bundle listener and will not close package admin service
2022-09-27 14:52:11,081 WARN [Catalina-utility-3] [plugin.osgi.factory.OsgiBundlePlugin] uninstallInternal OSGi container not running or undefined: Will not remove bundle listener and will not close package admin service
2022-09-27 14:52:11,085 WARN [Catalina-utility-3] [plugin.osgi.factory.OsgiBundlePlugin] uninstallInternal OSGi container not running or undefined: Will not remove bundle listener and will not close package admin service
2022-09-27 14:52:11,102 ERROR [Catalina-utility-3] [hipchat.spacetoroom.service.SpaceToRoomNotificationService] hipChatNotifications Failed to obtain hipchat notifications for event com.atlassian.plugin.event.events.PluginFrameworkShutdownEvent@18329a7f: service proxy has been destroyed
2022-09-27 14:52:11,102 WARN [Catalina-utility-3] [confluence.util.profiling.DurationThresholdWarningTimingHelperFactory] logMessage Execution time for publishing event com.atlassian.plugin.event.events.PluginFrameworkShutdownEvent@18329a7f took 8810 ms (warning threshold is 5000 ms)
2022-09-27 14:52:11,258 INFO [Catalina-utility-3] [com.atlassian.confluence.lifecycle] destroy Shutting down long running task service
2022-09-27 14:52:11,299 INFO [Catalina-utility-3] [com.atlassian.confluence.lifecycle] shutdownCacheManager Shutting down EhCache cache manager
2022-09-27 14:52:11,318 INFO [Catalina-utility-3] [com.atlassian.confluence.lifecycle] shutdownCacheManager Shutting down EhCache cache manager
2022-09-27 14:52:11,323 INFO [Catalina-utility-3] [com.atlassian.confluence.lifecycle] contextDestroyed Stopping Confluence
2022-09-27 15:01:21,719 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Starting Confluence 7.19.1 [build 8804 based on commit hash 5edffe31bc2e032d43ffb30ff7143f30974f0954] - synchrony version 4.1.1
2022-09-27 15:01:25,624 WARN [Catalina-utility-1] [confluence.impl.setup.DefaultBootstrapDatabaseAccessor] lambda$getBootstrapData$3 Unable to determine finalized build number from database [message: Unknown column 'FINALIZED' in 'where clause']. If you are upgrading from a Confluence version prior to 7.14, this is expected.
2022-09-27 15:01:25,712 INFO [Catalina-utility-1] [springframework.web.context.ContextLoader] initWebApplicationContext Root WebApplicationContext: initialization started
2022-09-27 15:01:29,413 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] <init> Loading EhCache cache manager
2022-09-27 15:01:42,500 INFO [Catalina-utility-1] [springframework.web.context.ContextLoader] initWebApplicationContext Root WebApplicationContext initialized in 16787 ms
2022-09-27 15:01:42,733 INFO [Catalina-utility-1] [atlassian.plugin.manager.DefaultPluginManager] lambda$earlyStartup$5 Plugin system earlyStartup begun
2022-09-27 15:01:46,179 WARN [FelixStartLevel] [extender.internal.support.ExtenderConfiguration] addDefaultDependencyFactories Gemini Blueprint extensions bundle not present, annotation processing disabled.
2022-09-27 15:02:14,708 WARN [Catalina-utility-1] [plugin.osgi.util.OsgiHeaderUtil] stripDuplicatePackages removing duplicate import package com.atlassian.confluence.api.service.network~ for plugin com.atlassian.streams.confluence - it is likely that a duplicate package was supplied in the OSGi instructions in the plugin's MANIFEST.MF
2022-09-27 15:02:29,658 WARN [ThreadPoolAsyncTaskExecutor::Thread 4] [scanner.runtime.impl.ComponentImportBeanFactoryPostProcessor] loadServiceClass Unable to load class 'com.atlassian.jira.user.UserKeyService' for component importation purposes. Skipping...
2022-09-27 15:02:29,659 WARN [ThreadPoolAsyncTaskExecutor::Thread 4] [scanner.runtime.impl.ComponentImportBeanFactoryPostProcessor] loadServiceClass Unable to load class 'com.atlassian.jira.util.I18nHelper' for component importation purposes. Skipping...
2022-09-27 15:02:39,787 INFO [Catalina-utility-1] [atlassian.confluence.event.MonitorableCallerRunsPolicy] rejectedExecution Asynchronous queue is full. The task will be processed synchronously in the current thread instead. We'll print this message every 60 seconds until there's enough space in queue to start processing messages asynchronously again. Executor: [java.util.concurrent.ThreadPoolExecutor@5e9646aa[Running, pool size = 1, active threads = 0, queued tasks = 192, completed tasks = 180]]
2022-09-27 15:02:44,758 INFO [Catalina-utility-1] [atlassian.plugin.manager.DefaultPluginManager] logTime Plugin system earlyStartup ended
2022-09-27 15:02:44,809 WARN [AtlassianEvent::CustomizableThreadFactory-1] [core.persistence.hibernate.HibernateVersionHistoryDao] getLatestBuildNumber Unable to determine build number from database. If you are upgrading from a Confluence version prior to 7.14.0, this is expected: Unknown column 'FINALIZED' in 'where clause'
2022-09-27 15:02:45,075 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeManager] beforeUpgrade Generating pre-upgrade recovery file...
2022-09-27 15:02:45,241 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] begin Starting
2022-09-27 15:02:45,253 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] logTask Starting DATABASE_INFORMATION
2022-09-27 15:02:45,258 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] logTask Finishing DATABASE_INFORMATION
2022-09-27 15:02:45,258 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] logTask Starting TABLE_DEFINITION
2022-09-27 15:02:46,324 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] logTask Finishing TABLE_DEFINITION
2022-09-27 15:02:46,325 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] totalNumberOfTables Total number of tables: 185
2022-09-27 15:02:46,325 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] logTask Starting TABLES_DATA
2022-09-27 15:13:57,016 ERROR [diagnostics-jvm-thread] [confluence.internal.diagnostics.ConfluenceMonitor] lambda$startMonitorThread$0 diagnostics-jvm-thread monitor thread crashed
java.lang.OutOfMemoryError: Java heap space
at java.base/java.lang.Object.clone(Native Method)
at java.base/java.lang.invoke.MemberName.clone(Unknown Source)
at java.base/java.lang.invoke.MemberName$Factory.resolve(Unknown Source)
at java.base/java.lang.invoke.MemberName$Factory.resolveOrFail(Unknown Source)
at java.base/java.lang.invoke.MethodHandles$Lookup.resolveOrFail(Unknown Source)
at java.base/java.lang.invoke.MethodHandles$Lookup.findStatic(Unknown Source)
at java.base/java.lang.invoke.InnerClassLambdaMetafactory.buildCallSite(Unknown Source)
at java.base/java.lang.invoke.LambdaMetafactory.metafactory(Unknown Source)
at java.base/java.lang.invoke.LambdaForm$DMH/0x00000001002a4040.invokeStatic(LambdaForm$DMH)
at java.base/java.lang.invoke.Invokers$Holder.invokeExact_MT(Invokers$Holder)
at java.base/java.lang.invoke.BootstrapMethodInvoker.invoke(Unknown Source)
at java.base/java.lang.invoke.CallSite.makeSite(Unknown Source)
at java.base/java.lang.invoke.MethodHandleNatives.linkCallSiteImpl(Unknown Source)
at java.base/java.lang.invoke.MethodHandleNatives.linkCallSite(Unknown Source)
at com.atlassian.confluence.internal.diagnostics.JavaMemoryMonitor.alertGarbageCollectorDuration(JavaMemoryMonitor.java:251)
at com.atlassian.confluence.internal.diagnostics.JavaMemoryMonitor.checkGarbageCollectorDuration(JavaMemoryMonitor.java:207)
at com.atlassian.confluence.internal.diagnostics.JavaMemoryMonitor.lambda$startMonitorThread$9(JavaMemoryMonitor.java:359)
at com.atlassian.confluence.internal.diagnostics.JavaMemoryMonitor$$Lambda$1008/0x0000000100e2e040.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
2022-09-27 15:13:57,019 ERROR [pool-12-thread-4] [springframework.scheduling.support.TaskUtils$LoggingErrorHandler] handleError Unexpected error occurred in scheduled task
java.lang.OutOfMemoryError: Java heap space
2022-09-27 15:13:57,038 WARN [C3P0PooledConnectionPoolManager[identityToken->2rvy8varz8yjj61yba2np|6e3d6602]-HelperThread-#0] [mchange.v2.async.ThreadPoolAsynchronousRunner] log An Error forced the closing of Thread[C3P0PooledConnectionPoolManager[identityToken->2rvy8varz8yjj61yba2np|6e3d6602]-HelperThread-#0,1,main]. Will attempt to reconstruct, but this might mean that something bad is happening.
java.lang.OutOfMemoryError: Java heap space
at com.mchange.v2.c3p0.impl.NewPooledConnection.close(NewPooledConnection.java:611)
at com.mchange.v2.c3p0.impl.NewPooledConnection.closeMaybeCheckedOut(NewPooledConnection.java:255)
at com.mchange.v2.c3p0.impl.C3P0PooledConnectionPool$1PooledConnectionResourcePoolManager.destroyResource(C3P0PooledConnectionPool.java:622)
at com.mchange.v2.resourcepool.BasicResourcePool$1DestroyResourceTask.run(BasicResourcePool.java:1114)
at com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread.run(ThreadPoolAsynchronousRunner.java:696)
2022-09-27 15:13:57,041 WARN [Catalina-utility-1] [confluence.impl.hibernate.ConfluenceHibernateTransactionManager] doRollback Performing rollback. Transactions:
->[null]: PROPAGATION_REQUIRES_NEW,ISOLATION_DEFAULT (Session #1743684578)
2022-09-27 15:13:57,043 WARN [Catalina-utility-1] [v2.c3p0.impl.NewPooledConnection] log [c3p0] A PooledConnection that has already signalled a Connection error is still in use!
2022-09-27 15:13:57,043 WARN [Catalina-utility-1] [v2.c3p0.impl.NewPooledConnection] log [c3p0] Another error has occurred [ com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException: No operations allowed after connection closed. ] which will not be reported to listeners!
com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException: No operations allowed after connection closed.
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstance(Unknown Source)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:389)
at com.mysql.jdbc.Util.getInstance(Util.java:372)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:958)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:937)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:926)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:872)
at com.mysql.jdbc.ConnectionImpl.throwConnectionClosedException(ConnectionImpl.java:1236)
at com.mysql.jdbc.ConnectionImpl.checkClosed(ConnectionImpl.java:1231)
at com.mysql.jdbc.ConnectionImpl.rollback(ConnectionImpl.java:4574)
at com.mchange.v2.c3p0.impl.NewProxyConnection.rollback(NewProxyConnection.java:1033)
at org.hibernate.resource.jdbc.internal.AbstractLogicalConnectionImplementor.rollback(AbstractLogicalConnectionImplementor.java:116)
at org.hibernate.resource.transaction.backend.jdbc.internal.JdbcResourceLocalTransactionCoordinatorImpl$TransactionDriverControlImpl.rollback(JdbcResourceLocalTransactionCoordinatorImpl.java:251)
at org.hibernate.engine.transaction.internal.TransactionImpl.rollback(TransactionImpl.java:100)
at com.atlassian.hibernate.adapter.adapters.TransactionV2Adapter.rollback(TransactionV2Adapter.java:44)
at org.springframework.orm.hibernate.HibernateTransactionManager.doRollback(HibernateTransactionManager.java:532)
at com.atlassian.confluence.impl.hibernate.ConfluenceHibernateTransactionManager.doRollback(ConfluenceHibernateTransactionManager.java:81)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.processRollback(AbstractPlatformTransactionManager.java:835)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.rollback(AbstractPlatformTransactionManager.java:809)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.base/java.lang.reflect.Method.invoke(Unknown Source)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:344)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
at com.sun.proxy.$Proxy80.rollback(Unknown Source)
at org.springframework.transaction.support.TransactionTemplate.rollbackOnException(TransactionTemplate.java:168)
at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:144)
at com.atlassian.confluence.upgrade.recovery.DefaultRecoveryFileGenerator.generate(DefaultRecoveryFileGenerator.java:61)
at com.atlassian.confluence.upgrade.impl.DefaultUpgradeManager.beforeUpgrade(DefaultUpgradeManager.java:173)
at com.atlassian.confluence.upgrade.AbstractUpgradeManager.upgrade(AbstractUpgradeManager.java:132)
at com.atlassian.confluence.plugin.PluginFrameworkContextListener.launchUpgrades(PluginFrameworkContextListener.java:122)
at com.atlassian.confluence.plugin.PluginFrameworkContextListener.contextInitialized(PluginFrameworkContextListener.java:82)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4766)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5230)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1396)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1386)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.base/java.lang.Thread.run(Unknown Source)
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
The last packet successfully received from the server was 659,030 milliseconds ago. The last packet sent successfully to the server was 659,045 milliseconds ago.
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstance(Unknown Source)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:389)
at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1038)
at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:3609)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2417)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2531)
at com.mysql.jdbc.ConnectionImpl.setAutoCommit(ConnectionImpl.java:4852)
at com.mchange.v2.c3p0.impl.NewProxyConnection.setAutoCommit(NewProxyConnection.java:1059)
at com.atlassian.config.db.DelegatingConnection.setAutoCommit(DelegatingConnection.java:53)
at jdk.internal.reflect.GeneratedMethodAccessor291.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.base/java.lang.reflect.Method.invoke(Unknown Source)
at com.atlassian.activeobjects.spi.ConnectionHandler.delegate(ConnectionHandler.java:39)
at com.atlassian.activeobjects.spi.ConnectionHandler.invoke(ConnectionHandler.java:34)
at com.sun.proxy.$Proxy2413.setAutoCommit(Unknown Source)
at com.atlassian.dbexporter.jdbc.JdbcUtils.withNoAutoCommit(JdbcUtils.java:54)
at com.atlassian.dbexporter.exporter.DataExporter.lambda$export$1(DataExporter.java:50)
at com.atlassian.dbexporter.jdbc.JdbcUtils.withConnection(JdbcUtils.java:29)
at com.atlassian.dbexporter.exporter.DataExporter.export(DataExporter.java:48)
at com.atlassian.dbexporter.DbExporter.exportData(DbExporter.java:65)
at com.atlassian.confluence.upgrade.recovery.DefaultRecoveryFileGenerator.lambda$generate$0(DefaultRecoveryFileGenerator.java:80)
at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:140)
... 16 more
Caused by: java.net.SocketException: Connection reset by peer (Write failed)
at java.base/java.net.SocketOutputStream.socketWrite0(Native Method)
at java.base/java.net.SocketOutputStream.socketWrite(Unknown Source)
at java.base/java.net.SocketOutputStream.write(Unknown Source)
at java.base/java.io.BufferedOutputStream.flushBuffer(Unknown Source)
at java.base/java.io.BufferedOutputStream.flush(Unknown Source)
at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:3591)
... 35 more
2022-09-27 15:13:57,117 WARN [C3P0PooledConnectionPoolManager[identityToken->2rvy8varz8yjj61yba2np|6e3d6602]-HelperThread-#2] [mchange.v2.async.ThreadPoolAsynchronousRunner] log An Error forced the closing of Thread[C3P0PooledConnectionPoolManager[identityToken->2rvy8varz8yjj61yba2np|6e3d6602]-HelperThread-#2,1,main]. Will attempt to reconstruct, but this might mean that something bad is happening.
java.lang.OutOfMemoryError: Java heap space
2022-09-27 15:13:57,117 WARN [C3P0PooledConnectionPoolManager[identityToken->2rvy8varz8yjj61yba2np|6e3d6602]-HelperThread-#1] [mchange.v2.async.ThreadPoolAsynchronousRunner] log An Error forced the closing of Thread[C3P0PooledConnectionPoolManager[identityToken->2rvy8varz8yjj61yba2np|6e3d6602]-HelperThread-#1,1,main]. Will attempt to reconstruct, but this might mean that something bad is happening.
java.lang.OutOfMemoryError: Java heap space
2022-09-27 15:13:57,204 ERROR [Catalina-utility-1] [springframework.transaction.support.TransactionTemplate] rollbackOnException Application exception overridden by rollback exception
com.atlassian.confluence.upgrade.recovery.DbDumpException: Failed to generate recovery file
at com.atlassian.confluence.upgrade.recovery.DefaultRecoveryFileGenerator.lambda$generate$0(DefaultRecoveryFileGenerator.java:86)
at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:140)
at com.atlassian.confluence.upgrade.recovery.DefaultRecoveryFileGenerator.generate(DefaultRecoveryFileGenerator.java:61)
at com.atlassian.confluence.upgrade.impl.DefaultUpgradeManager.beforeUpgrade(DefaultUpgradeManager.java:173)
at com.atlassian.confluence.upgrade.AbstractUpgradeManager.upgrade(AbstractUpgradeManager.java:132)
at com.atlassian.confluence.plugin.PluginFrameworkContextListener.launchUpgrades(PluginFrameworkContextListener.java:122)
at com.atlassian.confluence.plugin.PluginFrameworkContextListener.contextInitialized(PluginFrameworkContextListener.java:82)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4766)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5230)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1396)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1386)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.base/java.lang.Thread.run(Unknown Source)
Caused by: com.atlassian.confluence.upgrade.recovery.DbDumpException: Problem with table "null":
at com.atlassian.confluence.upgrade.recovery.RecoveryErrorService.newImportExportSqlException(RecoveryErrorService.java:21)
at com.atlassian.dbexporter.jdbc.JdbcUtils.withNoAutoCommit(JdbcUtils.java:57)
at com.atlassian.dbexporter.exporter.DataExporter.lambda$export$1(DataExporter.java:50)
at com.atlassian.dbexporter.jdbc.JdbcUtils.withConnection(JdbcUtils.java:29)
at com.atlassian.dbexporter.exporter.DataExporter.export(DataExporter.java:48)
at com.atlassian.dbexporter.DbExporter.exportData(DbExporter.java:65)
at com.atlassian.confluence.upgrade.recovery.DefaultRecoveryFileGenerator.lambda$generate$0(DefaultRecoveryFileGenerator.java:80)
... 17 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
The last packet successfully received from the server was 659,030 milliseconds ago. The last packet sent successfully to the server was 659,045 milliseconds ago.
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstance(Unknown Source)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:389)
at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1038)
at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:3609)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2417)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2531)
at com.mysql.jdbc.ConnectionImpl.setAutoCommit(ConnectionImpl.java:4852)
at com.mchange.v2.c3p0.impl.NewProxyConnection.setAutoCommit(NewProxyConnection.java:1059)
at com.atlassian.config.db.DelegatingConnection.setAutoCommit(DelegatingConnection.java:53)
at jdk.internal.reflect.GeneratedMethodAccessor291.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.base/java.lang.reflect.Method.invoke(Unknown Source)
at com.atlassian.activeobjects.spi.ConnectionHandler.delegate(ConnectionHandler.java:39)
at com.atlassian.activeobjects.spi.ConnectionHandler.invoke(ConnectionHandler.java:34)
at com.sun.proxy.$Proxy2413.setAutoCommit(Unknown Source)
at com.atlassian.dbexporter.jdbc.JdbcUtils.withNoAutoCommit(JdbcUtils.java:54)
... 22 more
Caused by: java.net.SocketException: Connection reset by peer (Write failed)
at java.base/java.net.SocketOutputStream.socketWrite0(Native Method)
at java.base/java.net.SocketOutputStream.socketWrite(Unknown Source)
at java.base/java.net.SocketOutputStream.write(Unknown Source)
at java.base/java.io.BufferedOutputStream.flushBuffer(Unknown Source)
at java.base/java.io.BufferedOutputStream.flush(Unknown Source)
at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:3591)
... 35 more
2022-09-27 15:13:57,215 ERROR [Catalina-utility-1] [atlassian.confluence.plugin.PluginFrameworkContextListener] contextInitialized Error initialising plugin manager: Could not roll back Hibernate transaction; nested exception is net.sf.hibernate.TransactionException: Unable to rollback against JDBC Connection
org.springframework.transaction.TransactionSystemException: Could not roll back Hibernate transaction; nested exception is net.sf.hibernate.TransactionException: Unable to rollback against JDBC Connection
at org.springframework.orm.hibernate.HibernateTransactionManager.doRollback(HibernateTransactionManager.java:535)
at com.atlassian.confluence.impl.hibernate.ConfluenceHibernateTransactionManager.doRollback(ConfluenceHibernateTransactionManager.java:81)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.processRollback(AbstractPlatformTransactionManager.java:835)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.rollback(AbstractPlatformTransactionManager.java:809)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.base/java.lang.reflect.Method.invoke(Unknown Source)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:344)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
at com.sun.proxy.$Proxy80.rollback(Unknown Source)
at org.springframework.transaction.support.TransactionTemplate.rollbackOnException(TransactionTemplate.java:168)
at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:144)
at com.atlassian.confluence.upgrade.recovery.DefaultRecoveryFileGenerator.generate(DefaultRecoveryFileGenerator.java:61)
at com.atlassian.confluence.upgrade.impl.DefaultUpgradeManager.beforeUpgrade(DefaultUpgradeManager.java:173)
at com.atlassian.confluence.upgrade.AbstractUpgradeManager.upgrade(AbstractUpgradeManager.java:132)
at com.atlassian.confluence.plugin.PluginFrameworkContextListener.launchUpgrades(PluginFrameworkContextListener.java:122)
at com.atlassian.confluence.plugin.PluginFrameworkContextListener.contextInitialized(PluginFrameworkContextListener.java:82)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4766)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5230)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1396)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1386)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.base/java.lang.Thread.run(Unknown Source)
Caused by: net.sf.hibernate.TransactionException: Unable to rollback against JDBC Connection
at org.hibernate.resource.jdbc.internal.AbstractLogicalConnectionImplementor.rollback(AbstractLogicalConnectionImplementor.java:122)
at org.hibernate.resource.transaction.backend.jdbc.internal.JdbcResourceLocalTransactionCoordinatorImpl$TransactionDriverControlImpl.rollback(JdbcResourceLocalTransactionCoordinatorImpl.java:251)
at org.hibernate.engine.transaction.internal.TransactionImpl.rollback(TransactionImpl.java:100)
at com.atlassian.hibernate.adapter.adapters.TransactionV2Adapter.rollback(TransactionV2Adapter.java:44)
at org.springframework.orm.hibernate.HibernateTransactionManager.doRollback(HibernateTransactionManager.java:532)
... 28 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException: No operations allowed after connection closed.
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstance(Unknown Source)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:389)
at com.mysql.jdbc.Util.getInstance(Util.java:372)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:958)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:937)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:926)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:872)
at com.mysql.jdbc.ConnectionImpl.throwConnectionClosedException(ConnectionImpl.java:1236)
at com.mysql.jdbc.ConnectionImpl.checkClosed(ConnectionImpl.java:1231)
at com.mysql.jdbc.ConnectionImpl.rollback(ConnectionImpl.java:4574)
at com.mchange.v2.c3p0.impl.NewProxyConnection.rollback(NewProxyConnection.java:1033)
at org.hibernate.resource.jdbc.internal.AbstractLogicalConnectionImplementor.rollback(AbstractLogicalConnectionImplementor.java:116)
... 32 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
The last packet successfully received from the server was 659,030 milliseconds ago. The last packet sent successfully to the server was 659,045 milliseconds ago.
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstance(Unknown Source)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:389)
at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1038)
at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:3609)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2417)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2531)
at com.mysql.jdbc.ConnectionImpl.setAutoCommit(ConnectionImpl.java:4852)
at com.mchange.v2.c3p0.impl.NewProxyConnection.setAutoCommit(NewProxyConnection.java:1059)
at com.atlassian.config.db.DelegatingConnection.setAutoCommit(DelegatingConnection.java:53)
at jdk.internal.reflect.GeneratedMethodAccessor291.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.base/java.lang.reflect.Method.invoke(Unknown Source)
at com.atlassian.activeobjects.spi.ConnectionHandler.delegate(ConnectionHandler.java:39)
at com.atlassian.activeobjects.spi.ConnectionHandler.invoke(ConnectionHandler.java:34)
at com.sun.proxy.$Proxy2413.setAutoCommit(Unknown Source)
at com.atlassian.dbexporter.jdbc.JdbcUtils.withNoAutoCommit(JdbcUtils.java:54)
at com.atlassian.dbexporter.exporter.DataExporter.lambda$export$1(DataExporter.java:50)
at com.atlassian.dbexporter.jdbc.JdbcUtils.withConnection(JdbcUtils.java:29)
at com.atlassian.dbexporter.exporter.DataExporter.export(DataExporter.java:48)
at com.atlassian.dbexporter.DbExporter.exportData(DbExporter.java:65)
at com.atlassian.confluence.upgrade.recovery.DefaultRecoveryFileGenerator.lambda$generate$0(DefaultRecoveryFileGenerator.java:80)
at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:140)
... 16 more
Caused by: java.net.SocketException: Connection reset by peer (Write failed)
at java.base/java.net.SocketOutputStream.socketWrite0(Native Method)
at java.base/java.net.SocketOutputStream.socketWrite(Unknown Source)
at java.base/java.net.SocketOutputStream.write(Unknown Source)
at java.base/java.io.BufferedOutputStream.flushBuffer(Unknown Source)
at java.base/java.io.BufferedOutputStream.flush(Unknown Source)
at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:3591)
... 35 more
2022-09-27 15:13:58,187 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue Waiting to find if plugin dependent upgrades are required. Maximum wait time will be 90 seconds.
2022-09-27 15:13:58,187 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue plugin dependent upgrades are required : true.
2022-09-27 15:13:58,205 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue Waiting to find if plugin dependent upgrades are complete. Maximum wait time will be 1800 seconds.
2022-09-27 15:18:28,206 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue Still waiting to find if plugin dependent upgrades are complete. Remaining wait time is 1500 seconds.
2022-09-27 15:23:28,208 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue Still waiting to find if plugin dependent upgrades are complete. Remaining wait time is 1200 seconds.
2022-09-27 15:28:28,210 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue Still waiting to find if plugin dependent upgrades are complete. Remaining wait time is 900 seconds.
2022-09-27 15:33:28,212 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue Still waiting to find if plugin dependent upgrades are complete. Remaining wait time is 600 seconds.
2022-09-27 15:38:28,214 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue Still waiting to find if plugin dependent upgrades are complete. Remaining wait time is 300 seconds.
2022-09-27 15:43:28,216 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue Still waiting to find if plugin dependent upgrades are complete. Remaining wait time is 0 seconds.
2022-09-27 15:43:58,216 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue Timed out waiting to find if plugin dependent upgrades are complete. Default to false.
2022-09-27 15:43:58,217 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue plugin dependent upgrades are complete : false.
2022-09-27 15:43:58,217 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeManager] entireUpgradeFinished Generating post-upgrade recovery file...
2022-09-27 15:43:58,251 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] begin Starting
2022-09-27 15:43:58,251 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] logTask Starting DATABASE_INFORMATION
2022-09-27 15:43:58,252 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] logTask Finishing DATABASE_INFORMATION
2022-09-27 15:43:58,252 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] logTask Starting TABLE_DEFINITION
2022-09-27 15:43:58,686 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] logTask Finishing TABLE_DEFINITION
2022-09-27 15:43:58,686 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] totalNumberOfTables Total number of tables: 185
2022-09-27 15:43:58,686 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] logTask Starting TABLES_DATA
2022-09-27 15:44:00,071 WARN [pool-16-thread-1] [core.persistence.hibernate.HibernateVersionHistoryDao] getLatestBuildNumber Unable to determine build number from database. If you are upgrading from a Confluence version prior to 7.14.0, this is expected: Unknown column 'FINALIZED' in 'where clause'
3 answers
1 accepted
Hi,
Looks like it's running out of memory. Increase the memory and try again.
2022-09-27 15:13:57,019 ERROR [pool-12-thread-4] [springframework.scheduling.support.TaskUtils$LoggingErrorHandler] handleError Unexpected error occurred in scheduled task
java.lang.OutOfMemoryError: Java heap space
Hi @Nick Van de Ven ,
please verify the Postgres version supported at the following link https://confluence.atlassian.com/doc/supported-platforms-207488198.html
Fabio
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Hey @Nick Van de Ven ,
Which logs that are generated you can find here https://confluence.atlassian.com/doc/working-with-confluence-logs-108364721.html
The main one we would want to look at is confluence-application.log
If that shows that the application is "ready to serve" then you might want to look at your server.xml file. That holds the connectors for your tomcat server to tell the system hwere to route your requests.
When upgrading that also gets overwritten.
https://confluence.atlassian.com/kb/set-a-context-path-for-atlassian-applications-836601189.html
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Hey @Dirk Ronsmans Thank you for your reply. I've updated my original post with the output of atlassian-confluence.log.
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