I would suggest you seek help from an Atlassian partner to help with the migration (i.e. merging instances). It will save you time and any potential risk you may encounter.
When you say "migrate", do you mean "merge one Jira Cloud system into another one, move your people over to the target (and probably stop using the source instance"? Or something else?
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Ok, that's a merge. not a migration (semantics, I know).
Have a look at the Jira Cloud migration assistant, it can help you move bits of one Jira into another Cloud instance and works with both Cloud and Server sources.
If that's not going to cover what you need, then I strongly recommend what @Prince Nyeche has suggested
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