Can you try the new Rapid boards? I am guessing that it is much more stricter on the values picked up based on the entry values into the Sprint.
I'm having exactly the same problem. Could you explain, what you exactly did to make it work, please? I'm using the Classic Issue Burndown Chart with Jira v.5.2.5 and Greenhopper 6.2.2.2. I would be surprised if a Jira upgrade to v5.2.6 would help?!
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I'm using the new Scrum Board in Jira Agile (6.3). There are a couple additional fixes in 6.3.2.2 that you will want.
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