Zephyr for JIRA - comes as a plugin that you can install in a JIRA and that gives you a Zephyr feature and functionality in a largely JIRA environment.
Zephyr Enterprise on the other hand a is a standalone Zephyr installation and not dependent on a JIRA installation.
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@Vickey Palzor Lepcha has given a very neat and precise answer.
For a detailed comparison you can please read the white paper available at https://www.atlassian.com/dam/jcr:56fded1e-64bd-4142-a361-be7cfd1e94af/Zephyr%20White%20Paper.pdf
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